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biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
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assign_taxonomy.py -m uclust should throw error when passed aligned sequences #1354

Open jairideout opened 10 years ago

jairideout commented 10 years ago

assign_taxonomy.py -m uclust (the new consensus-based taxonomy assigner) should throw an error (or at least a warning) if aligned sequences are supplied via -i.

This issue recently came up on the QIIME forum where a user was supplying aligned sequences and all assignments were marked as "Unassigned".

gregcaporaso commented 9 years ago

Really any of them should. I think this is a better goal for 2.0.0, when we're doing type checking.