Open ElDeveloper opened 10 years ago
standard pipeline log:
cogent.app.util.ApplicationError: Error running usearch61. Possible causes are unsupported version (current supported version is usearch v6.1.544) is installed or improperly formatted input file was provided
usearch log:
---Fatal error---
Out of memory, mymalloc(40606580), curr 4.08e+09 bytes
Also, would it be useful to flag that this is an 32 bit usearch problem and that 64 bit solves?
+1
This would be so useful to have reported back via QIIME. Any takers on this? If this same mechanism would work for usearch as well, that would be fantastic.
A forum user noted that when uclust runs out of memory, the log file generated by the workflow does not inform you about this but the uclust log does. If there's any way to integrate this information into the main log file that would be fantastic!