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biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
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investigate replacing SquareDendrogram with scipy's scipy.cluster.hierarchy.dendrogram #1548

Open gregcaporaso opened 10 years ago

gregcaporaso commented 10 years ago

and if not, port cogent.draw.dendogram to skbio

@ebolyen, would you want to work on this one?

Note there are examples of how to use the scipy version in the MSA chapter of IAB but we need to deal with the issue of overlapping/unreadable labels if we're going to use the scipy version. The issue is illustrated in the "language trees" in this section.

ebolyen commented 10 years ago

Will do this after I replace UPGMA

gregcaporaso commented 10 years ago

perfect

gregcaporaso commented 10 years ago

@ebolyen, I'm going to unassign this one from you since you're focusing on the taxonomy plotting functionality now. Sound good?

ebolyen commented 10 years ago

Sounds good, thanks! On May 21, 2014 7:07 AM, "Greg Caporaso" notifications@github.com wrote:

@ebolyen https://github.com/ebolyen, I'm going to unassign this one from you since you're focusing on the taxonomy plotting functionality now. Sound good?

— Reply to this email directly or view it on GitHubhttps://github.com/biocore/qiime/issues/1548#issuecomment-43758492 .

gregcaporaso commented 10 years ago

@ebolyen's code for @gregcaporaso's SciPy 2014 talk (ipynb here) should be take care of this.