The bowtie wrapper, which would go in cogent, needs sorting sequences by abundance and length. Currently that functionality is only available in qiime.sort, so we need to move that from qiime into cogent, and modify all the import statements wherever required.
natsort and similar functions are already in biom. sort_otu_table or sort_otu_table_by_mapping_field should go there as well (and natsort is only used in those two functions)
The bowtie wrapper, which would go in cogent, needs sorting sequences by abundance and length. Currently that functionality is only available in qiime.sort, so we need to move that from qiime into cogent, and modify all the import statements wherever required.
natsort and similar functions are already in biom. sort_otu_table or sort_otu_table_by_mapping_field should go there as well (and natsort is only used in those two functions)