search

biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
286 stars 267 forks source link

functionality in qiime.sort needs to be moved to cogent #229

Open gregcaporaso opened 12 years ago

gregcaporaso commented 12 years ago

The bowtie wrapper, which would go in cogent, needs sorting sequences by abundance and length. Currently that functionality is only available in qiime.sort, so we need to move that from qiime into cogent, and modify all the import statements wherever required.

natsort and similar functions are already in biom. sort_otu_table or sort_otu_table_by_mapping_field should go there as well (and natsort is only used in those two functions)

gregcaporaso commented 12 years ago

Imported from trac issue 229. Created by clemente on 2012-09-06T14:23:34, last modified: 2012-09-06T14:23:48