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biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
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Add to jackknifed_beta_diversity.py: output text file data - ID #282

Open jansuategui opened 12 years ago

jansuategui commented 12 years ago

Feature request please - It would be great if jackknifed_beta_diversity.py could output tab-separated files summarizing the data that are plotted in the PCoA plots. E.g., one text file of tab-separated average principal coordinate data, and a corresponding tab-separated file of error bar sizes for each PC/sample. That would allow the user to more easily manipulate and graph the jackknifed data in other software.

I may be wrong, but I am assuming that this would not be exactly the same as the user manually averaging and taking the s.d. of the multiple PCoA files.

Thanks! Jeff

gregcaporaso commented 11 years ago

Is this a feature that would be widely used? If you'd use this, respond with: +1.