search

biocore / qiime

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
GNU General Public License v2.0
285 stars 268 forks source link

plot_rank_abundance_graph file naming error #323

Open ElDeveloper opened 12 years ago

ElDeveloper commented 12 years ago

Unable to run script plot_rank_abundance_graph.py -i otu_table.txt -s '*' -x -f eps -v

Plot the rank-abundance curve of all samples in an OTU table:

Is there a threshold of total samples that can be run through this script ? I had a total of 95 sample ids but when I ran the script, file name assignment included all the sample names generated an error in naming the assigned PDF file.

IOError: [Errno 63] File name too long: '

When I reduced the sample number to 63 I got a data output. Have attached error output.

gregcaporaso commented 11 years ago

@justin212k, are you available to work on this one? You're currently listed as the maintainer of this script.

justin212k commented 11 years ago

roger, I'll look into it.

gregcaporaso commented 11 years ago

Fixed in #462 - thanks @justin212k and @ElDeveloper!