biocore / redbiom

Sample search by metadata and features
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Pulling all available Qiita metadata as a single table #100

Closed adamklie closed 4 years ago

adamklie commented 4 years ago

Using the command line interface of redbiom, Is there a way to pull a single table including all sample metadata available in Qiita? Something like redbiom search metadata "where qiita_study_id == *" or similar?

wasade commented 4 years ago

You could do something like redbiom fetch samples-contained --context $ctx | redbiom fetch sample-metadata