CTX for ITS data?

[hotblast]

I searched "redbiom summarize contexts". It looks like all CTX (total 79) are for 16s study, none for ITS. Can anyone make a CTX based on ITS amplicon study? Thanks, Gary

ContextName SamplesWithData FeaturesWithData Description

Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-41ebc6 100 14434 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Deblur-Illumina-16S-V4-250nt-3b87d8 200 14911 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 250) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V6-8-150nt-bd7d4d 51 4250 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V9-150nt-bd7d4d 263 5054 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Deblur-Illumina-16S-V4-200nt-05cde0 7009 73599 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 200) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V3-41ebc6 11760 35159 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Deblur-Illumina-16S-V4-100nt-fbc5b2 179406 6297806 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) Deblur-Illumina-16S-V3-90nt-99d1d8 1130 36905 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90) Deblur-Illumina-16S-V3-150nt-780653 1139 9418 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-IonTorrent-16S-V3-150nt-bd7d4d 32 1008 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V9-58196d 209 2633 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Deblur (Reference phylogeny for SEPP: Greengenes_13.8) Pick_closed-reference_OTUs-SILVA-LS454-16S-V3-150nt-96e6a9 3357 10563 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V4-41ebc6 7385 27273 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Pick_closed-reference_OTUs-Greengenes-LS454-16S-V6-100nt-a243a1 221 7294 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-90nt-44feac 173749 74298 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-IonTorrent-16S-V3-41ebc6 32 1433 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-150nt-bd7d4d 145308 73089 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Deblur-Illumina-16S-V4-e40b83 1785 120797 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V9-100nt-a243a1 321 14922 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-SILVA-LS454-16S-V4-100nt-cb8fea 6067 9921 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 100) Deblur-Illumina-16S-V6-8-150nt-780653 51 3906 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Deblur-Illumina-16S-V3-100nt-fbc5b2 1130 42073 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) Deblur-Illumina-16S-V3-V4-150nt-780653 60 869 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V34-5c6506 72 2221 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Deblur-Illumina-16S-V3-e40b83 138 7273 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Split libraries FASTQ Pick_closed-reference_OTUs-SILVA-LS454-16S-V4-150nt-96e6a9 6067 10792 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 150) Deblur-Illumina-16S-V9-90nt-99d1d8 319 35817 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-FASTA-16S-V3-100nt-a243a1 18 1706 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Deblur-Illumina-16S-V4-90nt-99d1d8 171936 4937125 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-250nt-66a626 174 2686 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 250) Pick_closed-reference_OTUs-SILVA-LS454-16S-V3-34e809 3288 6500 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Split libraries Pick_closed-reference_OTUs-SILVA-LS454-16S-V4-90nt-efd9ba 6067 8982 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 90) Pick_closed-reference_OTUs-SILVA-LS454-16S-V3-100nt-cb8fea 3358 8501 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 100) Deblur-Illumina-16S-V6-8-100nt-fbc5b2 51 2062 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-5c6506 200552 84164 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-LS454-16S-V6-150nt-bd7d4d 221 7227 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-SILVA-Illumina-16S-V4-90nt-efd9ba 942 7730 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V3-5c6506 1366 18170 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-LS454-16S-V5-V7-90nt-44feac 84 4246 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-SILVA-LS454-16S-V4-34e809 6007 12821 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Split libraries Deblur-Illumina-16S-V34-150nt-780653 72 7819 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V5-V7-41ebc6 84 1697 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Deblur-Illumina-16S-V9-100nt-fbc5b2 319 36485 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V3-90nt-44feac 1135 14850 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-SILVA-Illumina-16S-V4-150nt-96e6a9 1306 41654 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V6-41ebc6 221 8193 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries Pick_closed-reference_OTUs-Greengenes-IonTorrent-16S-V3-100nt-a243a1 32 1089 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-SILVA-Illumina-16S-V3-54d83f 138 1014 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Split libraries FASTQ Deblur-Illumina-16S-V9-150nt-780653 319 266737 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Deblur-Illumina-16S-V4-125nt-3aae8b 25607 747030 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 125) Pick_closed-reference_OTUs-Greengenes-not provided-16S-V4-150nt-bd7d4d 1905 10232 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V3-150nt-bd7d4d 1156 6942 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V3-150nt-bd7d4d 11665 35776 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V6-8-100nt-a243a1 51 4586 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-SILVA-Illumina-16S-V4-54d83f 1585 22836 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Split libraries FASTQ Deblur-Illumina-16S-V4-150nt-780653 139516 7645682 Deblur (Reference phylogeny for SEPP: Greengenes_13.8, BIOM: reference-hit.biom) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-not provided-16S-V4-5c6506 1905 10244 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-200nt-a5e305 7009 16070 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 200) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V3-100nt-a243a1 11908 36166 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V9-90nt-44feac 321 11964 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V4-150nt-bd7d4d 7544 30847 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V3-100nt-a243a1 1135 16186 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-SILVA-Illumina-16S-V4-d1cf1d 20 5361 Pick closed-reference OTUs (reference-seq: |projects|qiita_test_data|reference|Greengenes_13_8_gg_13_8-97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-LS454-16S-V3-90nt-44feac 11899 34392 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V9-5c6506 388 5155 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-SILVA-LS454-16S-V3-90nt-efd9ba 3358 7991 Pick closed-reference OTUs (reference-seq: |projects|qiita_data|reference|silva_119_Silva_119_rep_set97.fna) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-IonTorrent-16S-V3-90nt-44feac 32 1065 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V4-100nt-a243a1 7493 29896 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V34-150nt-bd7d4d 72 2653 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V5-V7-100nt-a243a1 84 4576 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-100nt-a243a1 173809 75990 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 100) Pick_closed-reference_OTUs-Greengenes-FASTA-16S-V3-90nt-44feac 18 1682 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-FASTA-16S-V3-150nt-bd7d4d 18 1705 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-FASTA-16S-V3-5c6506 18 1741 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Split libraries FASTQ Pick_closed-reference_OTUs-Greengenes-LS454-16S-V4-90nt-44feac 7505 27838 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-58196d 8468 34789 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Deblur (Reference phylogeny for SEPP: Greengenes_13.8) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V5-V7-150nt-bd7d4d 84 4971 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 150) Pick_closed-reference_OTUs-Greengenes-Illumina-16S-V4-125nt-65468f 27100 43261 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 125) Pick_closed-reference_OTUs-Greengenes-LS454-16S-V6-90nt-44feac 221 6572 Pick closed-reference OTUs (reference-seq: |databases|gg|13_8|rep_set|97_otus.fasta) | Trimming (length: 90)

[wasade]

See #102