Closed BenKaehler closed 2 years ago
I believe this was observed and fixed in #94, could you verify?
Thanks @wasade, it looks like the same bug, but the only fix I can see in #94 is limiting the Python version, which is a pain if you want to use the latest QIIME 2 release.
The fix that I found (and I've confirmed it works for the same queries they were having trouble with in #94) is to pip-install redbiom from source, for some reason. That works with Python 3.8.8.
I tried to rebuild the conda package to see if that might help but I ran out of time after the n-th broken conda build.
Good point, I didn't catch that Q2 moved to py38. Doesn't #97 solve this (granted we need to unpin CI)? It sounds like the path of least resistance is a rebuild of the conda package?
Thanks, I didn't notice #97. I would guess that #97 is why it works when I install from source, so hopefully a conda rebuild will fix it. I will try again when I get a chance. We should increment the third version number as well.
Ya certainly w/ version...
On Aug 18, 2021, at 12:37 PM, Ben Kaehler @.***> wrote:
Thanks, I didn't notice #97 https://github.com/biocore/redbiom/pull/97. I would guess that #97 https://github.com/biocore/redbiom/pull/97 is why it works when I install from source, so hopefully a conda rebuild will fix it. I will try again when I get a chance. We should increment the third version number as well.
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There seems to be a bug in the redbiom that is available on pip or conda (conda-forge). An example follows. If I clone the repo and pip install it, it works. I note that the versions are the same (0.3.5), so I'm note sure what's gone wrong.
This is all in the context of the current qiime2 installation.
Thanks!