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biocore / songbird

Vanilla regression methods for microbiome differential abundance analysis
BSD 3-Clause "New" or "Revised" License
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songbird installation with qiime2-2020.2 problem #162

Closed princy149 closed 1 year ago

princy149 commented 2 years ago

hi

I am trying to install songbird, using installation instructions in tutorial, but everytime I found this error could you help me regarding this why it occurs ? and how can i solve installation of songbird using qiime2 interface?

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mortonjt commented 2 years ago

I can't comment on why this is the case - but it looks like you need an older version of python for some reason ...

Have you tried pip install songbird instead? We've noticed that the conda recipes have been difficult to maintain with tensorflow.

princy149 commented 2 years ago

hi Mortonjt, Thank you so much for your reply and suggestion, actually I tried as you suggest for pip for installation of songbird, and get successful to see the songbird plugin in qiime info but again when i tried to run the command it creates some errors, which is I am going to attached here.

please check this what should I do to solve this problem? all version info is in info file...

info problem-1 problem3
mortonjt commented 2 years ago

ok - we've seen this error before. Take a look at the following issues https://github.com/biocore/songbird/issues/102 https://github.com/biocore/songbird/issues/120 -- you may have some issues with either your biom table, or sample name mismatches between your biom table and your metadata.

princy149 commented 2 years ago

thank you once again Mortonjt, for your promt reply and solving my issues..