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biocore / songbird

Vanilla regression methods for microbiome differential abundance analysis
BSD 3-Clause "New" or "Revised" License
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Adding --p-logging-dir option #91

Open mortonjt opened 4 years ago

mortonjt commented 4 years ago

As discussed in #70 , we don't want to arbitrary save logging information in a default location (esp if it is running in qiita or something).

Having a --p-logging-dir option may be needed in order to pipe this information to /tmp if necessary. We'll want to avoid the option of completely disabling logging if possible (too much code will have to change).

@antgonza , feel free to qiime in.

antgonza commented 4 years ago

Thank you for reaching out. This solution should work for Qiita but I think we might need to do some extra steps to add this directory to the actual output artifact ... but that can be done once this is added. 😉