I tried to do VSNM Normalization for "Kraken-TCGA-50-50-Validation-Split-1-Raw-Data.csv". And I set "Kraken-TCGA-50-50-Validation-Split-1-Raw-Data.csv" as qcData, "Metadata-TCGA-50-50-Validation-Split-1.csv" as qcMetadata. I also treated sample_type as bio.var, data_submitting_center_label, platform, experimental_strategy, tissue_source_site_label and portion_is_ffpe as adj.var. But the result I got is not consistent with the file you uploaded. I noted that some features were removed from the uploaded files, may I know what should I do to achieve this ?
I tried to do VSNM Normalization for "Kraken-TCGA-50-50-Validation-Split-1-Raw-Data.csv". And I set "Kraken-TCGA-50-50-Validation-Split-1-Raw-Data.csv" as qcData, "Metadata-TCGA-50-50-Validation-Split-1.csv" as qcMetadata. I also treated sample_type as bio.var, data_submitting_center_label, platform, experimental_strategy, tissue_source_site_label and portion_is_ffpe as adj.var. But the result I got is not consistent with the file you uploaded. I noted that some features were removed from the uploaded files, may I know what should I do to achieve this ?
Thanks for your attention and help.