skip() doesn't work for some cmd_questions

biocswirl-dev-team / BiocSwirl

BiocSwirl is a series of in-depth swirlify generated courses used to teach bioinformatics workflows in R/Bioconductor using an interactive and easy to digest format. This project was the People's Choice Award for the Vancouver Bioinformatics Hackathon Hackseq2019.

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skip() doesn't work for some cmd_questions #26

Closed juliaphilipp closed 4 years ago

juliaphilipp commented 4 years ago

Specifically trying to install.packages or BiocManager::install() via the skip() seems to lead to problems when demoing lessons

lisancao commented 4 years ago

Enabling AUTO_DETECT_NEWVAR <- FALSE in customTests.R fixes this issue, so for install lessons we need to have this line uncommented.