biocswirl-dev-team / BiocTerm

A highly configurable, lightweight and feature rich terminal interface with multi-language support for conducting bioinformatics. This project was the People's Choice Award for the Vancouver Bioinformatics Hackathon Hackseq2019.
Apache License 2.0
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[biocterm] [feat] Add Python Support #4

Closed lisancao closed 4 years ago

lisancao commented 4 years ago

[biocterm] [feat] Add Python Support

Using biocterm with multilanguage workflows is really important and helps set aside the interface from biocswirl. I want to hammer out a way to do this smoothly, reticulate can be used from within radian easily and through it you can specify virtual or conda environments. I want to see how this option works in practice, however at this moment I want to run reticulate within virtual env and have the pointers right at python during each radian startup.

Tasks

Resources

https://rstudio.github.io/reticulate/

Tag can be

biocswirl(related to course material)
biocterm (interface changes)
dev      (developers only)
file     (changes to file and folder structuring) 
rpkg     (r package/usethis and CRAN documentation changes)
feat     (new feature)
fix      (bug fix)
refactor (refactoring code)
style    (formatting, missing semi colons, etc; no code change)
doc      (changes to documentation)
test     (adding or refactoring tests; no production code change)
version  (version bump/new release; no production code change)
dbg      (Changes in debugging code/frameworks; no production code change)
license  (Edits regarding licensing; no production code change)
hack     (Temporary fix to make things move forward; please avoid it)
WIP      (Work In Progress; for intermediate commits to keep patches reasonably sized)
lisancao commented 4 years ago

Issue has been merged with #7