A highly configurable, lightweight and feature rich terminal interface with multi-language support for conducting bioinformatics. This project was the People's Choice Award for the Vancouver Bioinformatics Hackathon Hackseq2019.
Using biocterm with multilanguage workflows is really important and helps set aside the interface from biocswirl. I want to hammer out a way to do this smoothly, reticulate can be used from within radian easily and through it you can specify virtual or conda environments. I want to see how this option works in practice, however at this moment I want to run reticulate within virtual env and have the pointers right at python during each radian startup.
Tasks
[ ] Create new miniconda or python terminal window option within tmux OR
[ ] import reticulate functions a few commands right at radian window startup
biocswirl(related to course material)
biocterm (interface changes)
dev (developers only)
file (changes to file and folder structuring)
rpkg (r package/usethis and CRAN documentation changes)
feat (new feature)
fix (bug fix)
refactor (refactoring code)
style (formatting, missing semi colons, etc; no code change)
doc (changes to documentation)
test (adding or refactoring tests; no production code change)
version (version bump/new release; no production code change)
dbg (Changes in debugging code/frameworks; no production code change)
license (Edits regarding licensing; no production code change)
hack (Temporary fix to make things move forward; please avoid it)
WIP (Work In Progress; for intermediate commits to keep patches reasonably sized)
[biocterm] [feat] Add Python Support
Using biocterm with multilanguage workflows is really important and helps set aside the interface from biocswirl. I want to hammer out a way to do this smoothly, reticulate can be used from within radian easily and through it you can specify virtual or conda environments. I want to see how this option works in practice, however at this moment I want to run reticulate within virtual env and have the pointers right at python during each radian startup.
Tasks
Resources
https://rstudio.github.io/reticulate/
Tag can be