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biocypher / open-targets

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Trouble adding new association. #8

Closed rahulmaurya1507 closed 1 week ago

rahulmaurya1507 commented 2 months ago

have successfully created nodes by adding more open-targets categories. However, I am now encountering difficulties with creating associations. The current setup, including the adapter and schema_config.yml, is configured by default to handle gene to disease association.

I am trying to introduce a new type of association, such as a drug to gene association, but I am unsure of the necessary updates to make this work. Specifically, I need guidance on the changes required in the schema_config.yml, otar_biocypher/target_disease_evidence_adapter.py, and scripts/target_disease_script.py. If additional files need to be created or other steps are required, I would appreciate any insights or advice you could provide to help me move forward.

slobentanzer commented 2 months ago

Hi @rahulmaurya1507, thanks for the question. It would help me if you could clarify what you have already tried, did you follow the steps outlined in our tutorial for introducing new relationships? Are you getting any errors? Can you share any code?

slobentanzer commented 4 weeks ago

Hi @rahulmaurya1507, do you still have this issue? Otherwise, feel free to close the issue. :)

rahulmaurya1507 commented 4 weeks ago

I'm trying. Will have some results by tomorrow.

On Fri, 4 Oct 2024, 22:38 Sebastian Lobentanzer, @.***> wrote:

Hi @rahulmaurya1507 https://github.com/rahulmaurya1507, do you still have this issue? Otherwise, feel free to close the issue. :)

— Reply to this email directly, view it on GitHub https://github.com/biocypher/open-targets/issues/8#issuecomment-2394170764, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD46UMFT2LVZGZIV6ADFRQDZZ3DQTAVCNFSM6AAAAABNFKIVAOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGOJUGE3TANZWGQ . You are receiving this because you were mentioned.Message ID: @.***>

slobentanzer commented 1 week ago

Hi @rahulmaurya1507, just a reminder to please update or close the issue.