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biocypher / sc2cl

Knowledge graph for mapping and harmonising single cell experiments
MIT License
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Python module (BioCypher) development #2

Open slobentanzer opened 1 year ago

slobentanzer commented 1 year ago

Higher-level pipeline to combine the raw annotation data and CL terms in a knowledge graph. Card in BioCypher components board here: https://github.com/orgs/biocypher/projects/3?pane=issue&itemId=24984257

JonasJuergensen commented 1 year ago

A very simple implementation for biocypher has been developed, however it is not fully functional yet. For future versions more information about each cell should be stored, while also using potential multiple ontology terms for a cell. Lastly, on may also could discuss to change the general layout of how information is stored in the knowledge graph.