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biod / sambamba

Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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undefined reference when trying to make sambamba #329

Closed najoshi closed 6 years ago

najoshi commented 6 years ago

I'm getting an error when making sambamba:

gcc -Wl,--gc-sections -o build/sambamba build/sambamba.o -Lhtslib -Llz4/lib -Wl,-Bstatic -lhts -llz4 -Wl,-Bdynamic -lphobos2-ldc -ldruntime-ldc -lrt -lpthread -lm -ldl build/sambamba.o: In function _D6undead6stream6Stream16doFormatCallbackMFwZv': /data/src/joshi/sambamba-0.6.7/undeaD/src/undead/stream.d:1217: undefined reference to_D6undead3utf6toUTF8FNaNbNiNfNkJG4awZAa' collect2: error: ld returned 1 exit status make: *** [sambamba-ldmd2-64] Error 1

I found the same issue reported here, and the issue was closed saying that the latest tree worked, but it doesn't work for me. I cloned the latest repo and I installed the latest ldc. I tried many different things to get it to work, but to no avail. Any help would be highly appreciated.

pjotrp commented 6 years ago

Please discuss on google groups. The issue tracker is for bugs only.

pjotrp commented 6 years ago

See I have update the instructions. Please try again. See https://groups.google.com/forum/#!topic/sambamba-discussion/V_jQjdjL1gY