[WIP] Followup submodule refresh for sambamba and TravisCI pass with newer LDC versions

biod / sambamba

Tools for working with SAM/BAM data

http://thebird.nl/blog/D_Dragon.html

GNU General Public License v2.0

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[WIP] Followup submodule refresh for sambamba and TravisCI pass with newer LDC versions #354

Closed brainstorm closed 6 years ago

brainstorm commented 6 years ago

Closely related with https://github.com/biod/BioD/pull/36 and rabbit hole originated in https://github.com/bioconda/bioconda-recipes/pull/8787.

pjotrp commented 6 years ago

Thanks @brainstorm. We can not just use htslib from samtools because there are some incompatibilities with newer versions. It is a long standing thing that needs resolving. See also https://github.com/biod/sambamba/issues/280

brainstorm commented 6 years ago

Closing in favor of new progress on bioconda/bioconda-recipes#8787 and related upstream BioD/sambamba repos.