Closed cmeesters closed 4 years ago
Well, you have the right to resort to g*, I have that not to use this "data hydra".
In this particular case the background, which I did not elaborate, was that I considered supporting your software on our statewide (RLP in Germany) cluster. The prerequisites (amongst others) are that we are able to compile it (which implies including a D-compiler in our llvm setup) and -- considering the fact that most bioinf-software is abandonware -- to see that a software is actively maintained (at least for a while).
Hi @cmeesters, if you promise to update the documentation I will help you with any issues. Documentation is a valuable contribution.
This is a free software project that is maintained by people in their free time. Sambamba is a great and robust performer, that is the only reason to use it - no other.
The README points to existing performance metrics, btw. Feel free to help out with updates.
Dear all,
whilst trying sambamba-0.6.8-linux-static on sorted bam files (sorted with samtools v1.6) to mark duplicates, the command line was
./sambamba-0.6.8-linux-static markdup -p sorted/asdf_sorted.bam dummy/asdf.bam
sambamba reported:
sorted 344617544 end pairs and 305879 single ends