the command line or bash script used (feel free to shorten paths and filenames)
sambamba view -h -S --format=bam 2-A1-D1.sam >tmp.bam
sambamba sort -m 7000000000 tmp.bam
I faied in runing the command sometimes in Sun Grid Engine .
The erro is "sambamba-sort: Unable to write to stream"
I hope you can give me some sugesstion !
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version of sambamba:0.68
I faied in runing the command sometimes in Sun Grid Engine . The erro is "sambamba-sort: Unable to write to stream" I hope you can give me some sugesstion ! -->