When using -F "[XS]==null" to get uniquely mapped reads, I get a odd number of reads, despite having paired-end data which should result in an even number of reads. is there a way to only get the pairs that are uniquely mapped? I tried adding "proper_pair" but it still resulted in an odd numbers of reads
When using -F "[XS]==null" to get uniquely mapped reads, I get a odd number of reads, despite having paired-end data which should result in an even number of reads. is there a way to only get the pairs that are uniquely mapped? I tried adding "proper_pair" but it still resulted in an odd numbers of reads