Closed kalon33 closed 3 years ago
I am not using meson.
@pjotrp Not using Meson and using make only gives the same error:
kalon33@01291b8d8fe3:/home/kalon33/sambamba-0.7.1# make
mkdir -p bin/
compile single object...
ldc2 -singleobj -wi -I. -IBioD -I/usr/include/d/bio -g -J. -O3 -release -enable-inlining -boundscheck=off -L-lz -c -of=bin/sambamba-0.7.1.o utils/ldc_version_info_.d utils/lz4.d utils/strip_bcf_header.d utils/version_.d cram/exception.d cram/htslib.d cram/reader.d cram/reference.d cram/slicereader.d cram/wrappers.d cram/writer.d sambamba/depth.d sambamba/fixbins.d sambamba/flagstat.d sambamba/index.d sambamba/main.d sambamba/markdup.d sambamba/markdup2.d sambamba/merge.d sambamba/pileup.d sambamba/slice.d sambamba/sort.d sambamba/subsample.d sambamba/utils/common/bed.d sambamba/utils/common/file.d sambamba/utils/common/filtering.d sambamba/utils/common/intervaltree.d sambamba/utils/common/ldc_gc_workaround.d sambamba/utils/common/overwrite.d sambamba/utils/common/pratt_parser.d sambamba/utils/common/progressbar.d sambamba/utils/common/queryparser.d sambamba/utils/common/readstorage.d sambamba/utils/common/tmpdir.d sambamba/utils/view/alignmentrangeprocessor.d sambamba/utils/view/headerserializer.d sambamba/validate.d sambamba/view.d thirdparty/mergesort.d thirdparty/unstablesort.d
sambamba/sort.d(223): Error: undefined identifier compareReadNamesAndMates
sambamba/sort.d(228): Error: undefined identifier mixedCompareReadNamesAndMates
sambamba/sort.d(232): Error: undefined identifier compareReadNamesAsPicard
sambamba/sort.d(280): Error: undefined identifier compareReadNamesAndMates
sambamba/sort.d(285): Error: undefined identifier mixedCompareReadNamesAndMates
sambamba/sort.d(289): Error: undefined identifier compareReadNamesAsPicard
make: *** [Makefile:93: singleobj] Error 1
So it seems unrelated to Meson.
I'll look into it. Strangely all builds pass here and on Travis-CI.
Compiling 0.7.1 version with this environment under Debian Buster:
I got this error:
Could you help me solve this problem?
Thanks :)