exclude softclipped bases from the reported depth

biod / sambamba

Tools for working with SAM/BAM data

http://thebird.nl/blog/D_Dragon.html

GNU General Public License v2.0

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Closed aledj2 closed 4 years ago

aledj2 commented 4 years ago

As far as I can tell the filters work on the read level, not the base level.

pjotrp commented 4 years ago

Patches are welcome.

aledj2 commented 4 years ago

Actually I think it doesn't count softclipped bases.