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biod / sambamba

Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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Sambamba not running in OSX Catalina #449

Closed juulluu21 closed 4 years ago

juulluu21 commented 4 years ago

Hi: I am trying to run Smabamba in OSX Catalina. I get this in terminal:

dyld: lazy symbol binding failed: Symbol not found: _dyld_enumerate_tlv_storage Referenced from: /usr/local/Cellar/sambamba/0.6.8/bin/sambamba Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: _dyld_enumerate_tlv_storage Referenced from: /usr/local/Cellar/sambamba/0.6.8/bin/sambamba Expected in: /usr/lib/libSystem.B.dylib

Abort trap: 6

I have tried different versions of sambamba. Same issue. I think its a problem with my OSX Catalina. How to fix this?

Thanks!

pjotrp commented 4 years ago

We don't support OSX though some people manage to run sambamba on it. A docker container may do the trick.

pjotrp commented 4 years ago

See #424