Feature request: fixmate like samtools

biod / sambamba

Tools for working with SAM/BAM data

http://thebird.nl/blog/D_Dragon.html

GNU General Public License v2.0

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Feature request: fixmate like samtools #489

Open kaji331 opened 2 years ago

kaji331 commented 2 years ago

after bwa mem, the samtools suggested fixmate/sort command before mark duplicates. Is any way to implement those by sambamba now or add fixmate in sambamba in future? Thanks!

pjotrp commented 2 years ago

Feel free to add the feature.