biod / sambamba

Tools for working with SAM/BAM data
http://thebird.nl/blog/D_Dragon.html
GNU General Public License v2.0
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Sambamba subsample produces truncated BAMs #506

Open Sven-Winter opened 1 year ago

Sven-Winter commented 1 year ago

Subsampled BAM files generated with sambamba subsample are truncated and cannot be indexed neither with sambamba index nor samtools index

We have tried different sambamba version from conda (0.6.9, 0.8.2) with the same results.