sambamba-sort: index [1] exceeds array of length 1

biod / sambamba

Tools for working with SAM/BAM data

http://thebird.nl/blog/D_Dragon.html

GNU General Public License v2.0

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sambamba-sort: index [1] exceeds array of length 1 #516

Open Bio-Quest opened 2 months ago

Bio-Quest commented 2 months ago

Only bug reports!

sambamba view --with-header --format bam --sam-input --nthreads 48 A.sam | \
sambamba sort --compression-level 9 --nthreads 48 --tmpdir ./temp --out A.bam

Describe the bug

sambamba-sort: index [1] exceeds array of length 1

To Reproduce

Steps to reproduce the behavior: sambamba version 1.0.0