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biodatageeks
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sequila-native
A set of native implementation of common bioinformatics algorithms to be used as Arrow-Datafusion or SeQuiLa (Apache Spark) extensions.
Apache License 2.0
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17 add support for or
#42
pkhamutou
opened
1 day ago
0
Compare with results of AIList - some performance bottleneck for larger # of rows returned?
#41
mwiewior
opened
1 day ago
3
Check if it's really faster in some cases than coitrees
#40
mwiewior
opened
2 days ago
0
Benchmark GHA
#39
mwiewior
opened
2 days ago
2
Wrong results for AIList
#38
mwiewior
opened
2 days ago
4
Flags for Intel MacOS
#37
mwiewior
closed
2 days ago
0
Add support for bio-info formats from exon
#36
mwiewior
opened
3 days ago
0
Add build side pushdown to probe side
#35
mwiewior
opened
6 days ago
0
Add Cargo.lock
#34
pkhamutou
closed
1 week ago
0
Adding new GHA runners
#33
mwiewior
closed
1 week ago
0
Fixing target-cpu=native on Linux x64 and simplifying build macros
#32
mwiewior
closed
1 week ago
0
Performance degradation between DF 39 and 43
#31
mwiewior
opened
1 week ago
0
Making output less verbose by default
#30
mwiewior
closed
1 week ago
0
Bumping DF to official 43.0.0 not revision tag
#29
mwiewior
closed
1 week ago
0
feat: Upgrade Datafusion dep
#28
mwiewior
closed
1 week ago
0
Fix clippy "unexpected `cfg` condition value" warning
#27
pkhamutou
closed
1 week ago
1
update DataFusion to v42.2.0
#26
pkhamutou
closed
1 week ago
0
add -f support
#25
pkhamutou
closed
2 weeks ago
0
fix: Running on huge-c10m25
#24
mwiewior
closed
2 weeks ago
0
feat: Using a self-hosted runner
#23
mwiewior
closed
2 weeks ago
0
Add clippy
#22
mwiewior
closed
2 weeks ago
2
Add compilation configuration to compile different versions for different cpus
#21
pkhamutou
closed
2 weeks ago
0
Add docs to Native and Comet
#20
mwiewior
opened
3 weeks ago
0
Add support for left side smaller dataset selection and add option to disable it
#19
mwiewior
opened
3 weeks ago
0
Add support for -f for cli
#18
mwiewior
closed
2 weeks ago
0
Add support for < or >
#17
mwiewior
opened
3 weeks ago
0
Upgrade DataFusion to v42.2.0
#16
mwiewior
closed
1 week ago
1
Compile on MacOS and Linux Issue
#15
mwiewior
closed
2 weeks ago
1
Release sequila-native to cargo via GA
#14
mwiewior
opened
3 weeks ago
0
Add GA benchmarks
#13
mwiewior
opened
3 weeks ago
0
Umbrella issue for the paper release
#12
mwiewior
opened
3 weeks ago
0
Fix reference
#11
mwiewior
closed
1 month ago
0
refactor stream processing and add logging
#10
pkhamutou
closed
2 weeks ago
0
detect range join when there is not equi condition
#9
pkhamutou
closed
3 months ago
0
apply clippy
#8
pkhamutou
closed
3 months ago
0
add AIList algorithm
#7
pkhamutou
closed
3 months ago
0
Use rust bio
#6
pkhamutou
closed
3 months ago
0
fix: move files
#5
pkhamutou
closed
4 months ago
0
Implement interval join
#4
pkhamutou
closed
4 months ago
0
feat: add is_range_join check
#3
pkhamutou
closed
4 months ago
0
CI/CD improvements
#2
mwiewior
opened
9 months ago
0
Feat/sequila native init
#1
pkhamutou
closed
9 months ago
0