search

biodavidjm / artMS

Analytical R Tools for Mass Spectrometry
GNU General Public License v3.0
14 stars 7 forks source link

Upgrade gprofiler to gprofiler2 #158

Open biodavidjm opened 4 years ago

biodavidjm commented 4 years ago

A new version of gprofiler is out: gprofiler2. the main function is now 

gostres <- gost(query = c("X:1000:1000000", "rs17396340", "GO:0005005", "ENSG00000156103", "NLRP1"), 
                organism = "hsapiens", ordered_query = FALSE, 
                multi_query = FALSE, significant = TRUE, exclude_iea = FALSE, 
                measure_underrepresentation = FALSE, evcodes = FALSE, 
                user_threshold = 0.05, correction_method = "g_SCS", 
                domain_scope = "annotated", custom_bg = NULL, 
                numeric_ns = "", sources = NULL, as_short_link = FALSE)