This PR adds a new API function for generating haplotype call plots: a .png is created for each marker, showing read counts of the alleles above the detection threshold, as well as the analytical threshold. This PR also integrates this API call into the mhpl8r pipe workflow.
[x] Changes are clearly described above
Any relevant issue threads are referenced in the description
[x] Any new features are tested (see the development manual for details)
This PR adds a new API function for generating haplotype call plots: a .png is created for each marker, showing read counts of the alleles above the detection threshold, as well as the analytical threshold. This PR also integrates this API call into the
mhpl8r pipe
workflow.Any relevant issue threads are referenced in the description