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bioforensics / MicroHapulator

Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
https://microhapulator.readthedocs.io/
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Dev installation command line instruction has type-o and `importlib-metadata` incompatible version number #154

Open danejo3 opened 2 years ago

danejo3 commented 2 years ago

In the installation docs, under Development quick start, you'll see this.

conda create --new microhapulator python=3.8 flash bwa samtools fastqc

Need to replace --new to either -n or --name.

Also, when I run, make devdeps, I run into dependency error. (See the screen shot below.)

image

standage commented 2 years ago

Thanks for the report. I don't really understand the conflicts. I'll clean this up, but in the mean time, you could try copying and pasting the devdeps dependencies from the Makefile to a conda install command.

standage commented 2 years ago

I forgot you had reported this already. I did a bit of troubleshooting in https://github.com/bioforensics/MicroHapulator/pull/156#discussion_r993833102, and I have (what I hope is) a temporary solution to the compatibility issue. I'll leave this thread open in the mean time.

And whoops, documentation typo fix didn't make it into this bugfix release!