Closed standage closed 5 years ago
Merging #56 into master will decrease coverage by
0.01%
. The diff coverage is100%
.
@@ Coverage Diff @@
## master #56 +/- ##
==========================================
- Coverage 97.18% 97.17% -0.02%
==========================================
Files 26 26
Lines 818 815 -3
Branches 151 150 -1
==========================================
- Hits 795 792 -3
Misses 11 11
Partials 12 12
Impacted Files | Coverage Δ | |
---|---|---|
microhapulator/panel.py | 98.02% <100%> (-0.04%) |
:arrow_down: |
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Previously the
usa
panel included 100 loci for which there was supposed to be allele frequency data for all 19 sub-populations in a mock population roughly matching demographics in the United States. Due to a bug in that code, some loci in the panel do not have allele frequency data available for all populations. Also, since the initial panel slated for evaluation on real data (beta
) contains 50 loci, it makes sense to restrict theusa
panel to 50 loci as well.This update fixes the bug and limits the panel to the top 50 loci ranked by Ae.
Related to #55.