Adding support for new "taxonkit filter" command

[standage]

Pursuant to #3, this branch adds support for the new taxonkit filter command.

[standage]

Will need to wait to merge this PR until the bug fix in https://github.com/shenwei356/taxonkit/issues/37 is published in a new release.

[standage]

Also, need to update the README!

[shenwei356]

I update TaxonKit again, changes needed? :)

• taxonkit filter:
  • flag -E/--equal-to supports multiple values.
• taxonkit reformat:
  • new placeholder {t} for subspecies/strain, {T} for strain.

[shenwei356]

Sorry, updated again.

• v0.7.2
  • taxonkit filter:
    • flag -E/--equal-to supports multiple values.
    • new flag -n/--save-predictable-norank: do not discard some special ranks without order when using -L, where rank of the closest higher node is still lower than rank cutoff.
  • taxonkit reformat:
    • new placeholder {t} for subspecies/strain, {T} for strain. Thanks @wqssf102 for feedback.
    • new flag -S/--pseudo-strain for using the node with lowest rank as strain name, only if which rank is lower than "species" and not "subpecies" nor "strain".
• v0.7.1
  • taxonkit filter:
    • disable unnecessary stdin check when using flag --list-order or --list-ranks. #36
    • better handling of black list, empty default value: "no rank" and "clade". And you need use -N/--discard-noranks to explicitly filter out "no rank", "clade". #37
    • update help message. Thanks @standage for improve this command! #38

Binaries

• taxonkit_linux_arm64.tar.gz
• taxonkit_darwin_arm64.tar.gz

[standage]

Awesome, thanks @shenwei356! I'll open up a separate PR to support the new 0.7.2 features.

[standage]

I will test and update when 0.7.2 is published, or when you post AMD binaries.