Run long tests when needed - Githubissues

bioforensics / yeat

YEAT: Your Everyday Assembly Tool

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Run long tests when needed #20

Closed danejo3 closed 1 year ago

danejo3 commented 1 year ago

The purpose of this PR is to resolve #8 .

Previously, when YEAT was created, long running tests testing the entire workflow were not implemented due to long wait times. In consequence, only "dry" snakemake runs were tested.

In this PR, new commands in the makefile were added to run long tests.

The following commands are now available when running make.

make test - short tests only, only dry runs are tested
make testlong - long tests only - tests include: spades, megahit, and unicycler
make testall - both short and long tests

danejo3 commented 1 year ago

PR should be relatively straight forward and will help with test suite time management. Let me know if there is anything else that I need to add or change. Thanks!