Adding `--seed` flag to customize the `seed` when downsampling

danejo3 commented 1 year ago

The purpose of this PR is to resolve #27 by adding a --seed flag to ensure that the original test test_custom_downsample_input() could reproduce the same number of contigs, config lengths, and total length.

Other additions to this PR include:

a small update to the README.md,
an additional test testing for an acceptable range of expected values because of the random seed that was introduced in #23 , and
enforcing users to have python >v3.9 because of the exit_on_error parameter that was introduced in #23 as well.

danejo3 commented 1 year ago

Okay, code is ready for review! Let me know if you have any questions or concerns. Thanks

danejo3 commented 1 year ago

Okay! A couple of comments on version pinning, added suggestions (Thanks!), and updated change log. Everything is ready to go!

bioforensics / yeat

Adding `--seed` flag to customize the `seed` when downsampling #29