Handling `fasta` user input files

bioforensics / yeat

YEAT: Your Everyday Assembly Tool

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Handling `fasta` user input files #51

Open danejo3 opened 10 months ago

danejo3 commented 10 months ago

Currently, YEAT can only accept fastq files. If users provide fasta files, FastQC will crash because there are no quality scores available. Either convert fasta files to fastq or prevent users to pass them in.

If convert:

seqtk seq -F '#' in.fa > out.fq