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bioimage-io / collection-bioimage-io

(deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO
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EpitheliaAffinityModel #605

Open utterances-bot opened 1 year ago

utterances-bot commented 1 year ago

EpitheliaAffinityModel

Bioimage.io -- an AI model repository for deep learning.

https://bioimage.io/?tags=wild-whale&id=10.5281%2Fzenodo.6079314&type=model

dasv74 commented 1 year ago

This is a effective pre-trained model. On Fiji (deepImageJ) the output of this model is a 8-channel stack shown as "composite" with 8 different color LUTs, so, the output is almost white everywhere! A 2-line post-processing macro can convert the output in grayscale to have a good display: convert_to_grayscale_nonecomposite.ijm

Property.set("CompositeProjection", "null"); Stack.setDisplayMode("grayscale");