bioimage-io / collection-bioimage-io

(deprecated in favor of bioimage-io/collection) RDF collection for BioImage.IO
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Update Image Translation from Lifeact-RFP to sir-DNA images - Pix2Pix #698

Open bioimageiobot opened 6 months ago

bioimageiobot commented 6 months ago

This is an automatic PR created by the @bioimageiobot regarding changes to the resource item 10.5281/zenodo.10405148. The following version(s) will be added:

Please review the changes and make sure the new item or version(s) pass the following check list:

Maintainers: @cfusterbarcelo

Note: If you updated or re-uploaded another version for the current item on Zenodo, this PR won't be changed automatically. To proceed, you can do the following:

  1. Block this version, but keep looking for future versions: Edit the current resource.yaml and keep the top-level status field as accepted, but change the status under the current version to blocked.
  2. Accept this version and keep looking for future versions: Merge this PR for now.
  3. Keep proposed version(s) (and this resource in general if it is new) as pending: Close this PR without merging.

    Then wait for the CI on the main branch to complete. It should detect the new version(s) and create another PR for the new version(s).

Previous PRs of this resource: none

bioimageiobot commented 6 months ago

preview

FynnBe commented 6 months ago

This model has some hardcoded cuda parts and thus fails when cuda isn't available:

"Could not run 'aten::empty_strided' with arguments from the 'CUDA' backend.
esgomezm commented 5 months ago

Hi there,

This model was not properly exported. @cfusterbarcelo did you use the code in ZeroCostDL4Mic notebook as it is written? Also, this model has no pre or postprocessing encoded, which should be from the ZCDL4M code, and the input images are 8 bit RGB images. Is that correct?