Update 10.5281/zenodo.10668825

[bioimageiobot]

This is an automatic PR created by the @bioimageiobot regarding changes to the resource item 10.5281/zenodo.10668824. The following version(s) will be added:

• 10668825 (version from 2024-02-16)

Please review the changes and make sure the new item or version(s) pass the following check list:

• [ ] Passed the bioimage.io CI tests: static (and dynamic) validations
• [ ] The meta information for the RDF item is complete
  • [ ] The tags are complete and describe the model
  • [ ] Naming is intuitive and descriptive, example: Multi-Organ Nucleus Segmentation (StarDist 2D)
  • [ ] Authors are provided
  • [ ] Documentation is complete
  • For models, include an overview, describe how the model is trained, what is the training data, how to use the model, how to validate the results and list the references. TODO: Model documentation template.
• [ ] Approved by at least one of the bioimage.io admin team member.

Maintainers: none specified

Note: If you updated or re-uploaded another version for the current item on Zenodo, this PR won't be changed automatically. To proceed, you can do the following:

1. Block this version, but keep looking for future versions: Edit the current resource.yaml and keep the top-level status field as accepted, but change the status under the current version to blocked.
2. Accept this version and keep looking for future versions: Merge this PR for now.

3. Keep proposed version(s) (and this resource in general if it is new) as pending: Close this PR without merging.

   Then wait for the CI on the main branch to complete. It should detect the new version(s) and create another PR for the new version(s).

Previous PRs of this resource: none

[FynnBe]

@youyifong were you intending to contribute your model to bioimage.io? If so, your record is missing an rdf.yaml file. You can find details here: https://bioimage.io/docs/#/contribute_models/README https://bioimage.io/docs/#/contribute_models/contribute_zenodo.md might also be relevant for you.

[bioimageiobot]

preview-collection-json

[youyifong]

Hi, thanks for reaching out. I am interested in uploading the model to bioimage.io. Is there a way to make the process "dumber"? I have a fine-tuned Cellpose model for immunofluorescence images trained with 10,000 instances, starting from cyto. It may be of interest to the community. Would it be possible for you to create a form where I can upload the file and answer a few questions to get it uploaded? Thanks, Youyi

On Fri, Feb 16, 2024 at 3:08 AM Fynn Beuttenmüller @.***> wrote:

@youyifong https://github.com/youyifong were you intending to contribute your model to bioimage.io? If so, your record is missing an rdf.yaml file. You can find details here: https://bioimage.io/docs/#/contribute_models/README https://bioimage.io/docs/#/contribute_models/contribute_zenodo.md might also be relevant for you.

— Reply to this email directly, view it on GitHub https://github.com/bioimage-io/collection-bioimage-io/pull/720#issuecomment-1947926153, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHBH5L2SK4VKRDOLPPVLK3TYT4HXTAVCNFSM6AAAAABDLLDKDOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNBXHEZDMMJVGM . You are receiving this because you were mentioned.Message ID: @.***>

[FynnBe]

yes, we are currently updating the form, it will be available again here: https://bioimage.io/#/upload

[youyifong]

Ok, thanks.

On Mon, Feb 19, 2024 at 4:19 AM Fynn Beuttenmüller @.***> wrote:

yes, we are currently updating the form, it will be available again here: https://bioimage.io/#/upload

— Reply to this email directly, view it on GitHub https://github.com/bioimage-io/collection-bioimage-io/pull/720#issuecomment-1952333278, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHBH5L455BIRNVEVGFS2CPDYUM7MDAVCNFSM6AAAAABDLLDKDOVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSNJSGMZTGMRXHA . You are receiving this because you were mentioned.Message ID: @.***>