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bioimage-io / collection

Maintains the resources displayed on bioimage.io (Successor to collection-bioimage-io)
https://bioimage-io.github.io/collection/
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BiaPy checks failing #90

Closed FynnBe closed 3 months ago

FynnBe commented 3 months ago

@danifranco the new biapy checks seem to run into some issues when actually checking the models in the zoo: https://github.com/bioimage-io/collection/actions/runs/10366799925/job/28696868334

Any idea what's going wrong there? Could you please fix it?

FynnBe commented 3 months ago

Just found some trivial issues that I try to fix in https://github.com/bioimage-io/collection/commit/746ebef425762538c58d407a49488bfe8584922c

danifranco commented 3 months ago

Solved in https://github.com/bioimage-io/collection/commit/ea86bf6dbc5a65a2c55a2c6bcf4d11b21f622b22 . We also fixed a few issues when checking models in last BiaPy's realease v3.5.1. Seems that the CI is working now: https://github.com/bioimage-io/collection/actions/runs/10416642296

Also I can see now BiaPy icon in the model cards: image

There is no BiaPy icon in affable-shark model for some reason even if the checks passed correctly (I checked the .json generated). I know that model is being used for testing new code so maybe something is different or needs to be updated: just to let you know.

FynnBe commented 3 months ago

I regenerated the collection json and test summary files and now it should appear (now there is an entry in test_summary.yaml, the website does not work for me atm, so I can't check it there) But it seems that the biapy compatibility report was just not yet available an hour ago when the collection json and test summary files were generated last.

So great that they are there now! BiaPy compatibility checks are online!