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bioimage-io / core-bioimage-io-python

Python libraries for loading, running and packaging bioimage.io models
https://bioimage-io.github.io/core-bioimage-io-python/bioimageio/core.html
MIT License
28 stars 21 forks source link

Add testcase for blocking with optional inputs #435

Open FynnBe opened 1 week ago

FynnBe commented 1 week ago

We have not had this use case (SAM-like models are currently the only ones with optional inputs. However, they cannot be processed blockwise, because we have not implemented the required coordinate system transforms for its prompt input)

I'm sure a suitable model will come along though -- and bioimageio.core should be ready for it!

FynnBe commented 1 week ago

Checking (and warning about) the concatenable flag of axes can probably also be improved when attempting to process blockwise.