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bioinfo-biols / CIRI-cookbook

Document for CIRI-series software
https://ciri-cookbook.readthedocs.io/en/latest/index.html
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Java error when running CIRI_Full_v2.1.1.jar Pipeline #14

Open smarhon opened 2 years ago

smarhon commented 2 years ago

I get this error message when I run CIRI_Full_v2.1.1.jar Pipeline .

Exception in thread "main" java.io.FileNotFoundException: RNASeq_LacZAZA_D5_2_CIRI/CIRI-AS_output/RNASeq_LacZAZA_D5_2_CIRI_jav.list (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at java.io.FileReader.(FileReader.java:58) at Merge3.getmerge(Merge3.java:114) at CIRI_Full2.main(CIRI_Full2.java:280)

I checked CIRI-AS_output folder and not files are generated there.

Kevinzjy commented 2 years ago

Hi @smarhon , could you check the CIRI_output directory? Is the .ciri file successfully generated?