How to merge results from CIRI2

[tjhwangxiong]

Dear Sir,

Is there any way to merge the .ciri from several samples generated by CIRI2?

Here is another issue. Can CIRIquant use raw fastq file as input? As CIRI_AS could not use sam files generated from trimmed fastq file. We uased raw fastq file for bwa alignment and CIRI2.

Thanks.

[Kevinzjy]

1. There's no way to merge two CIRI2 results simply, you have to write some lines of code to merge them yourself.

2. CIRIquant doesn't need consistent read lengths, so you can use both raw or trimmed fastq files as input.