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bioinfo-biols / CIRI-cookbook

Document for CIRI-series software
https://ciri-cookbook.readthedocs.io/en/latest/index.html
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Error on running CIRI_Full Merge after running CIRI_Full step wise #24

Open Firu-code opened 1 year ago

Firu-code commented 1 year ago

Command I am using : java -jar CIRI_Full_v2.1.1.jar Merge -c 759_prefix_CIRI -as 759_Raw_Prefix_CIRI_AS_jav.list -ro 759_RO2_ro2_info.list -a genomic.gtf -r GCF_002263795.2_ARS-UCD1.3_genomic.fna -o 759_Merge

classpath = / Output prefix = /media/firu/TOSHIBA/CIRI/759_Merge

Merge module start

Loading Annotation... Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Index 2 out of bounds for length 1 at Merge3.getmerge(Merge3.java:77) at CIRI_Full2.main(CIRI_Full2.java:555)

The java version that I am using is below: java version "19.0.1" 2022-10-18 Java(TM) SE Runtime Environment (build 19.0.1+10-21) Java HotSpot(TM) 64-Bit Server VM (build 19.0.1+10-21, mixed mode, sharing)

Can anyone please help.