Hi thank you for developing this cool tool!
I am using CIRIquant from fastq with following command.
CIRIquant -t 30 \ -1 $read_1 \ -2 $read_2 \ --config $BASE/CIRIquant.config \ -o $BASE/CIRI_quant_output \ -p $SAMPLE
When CIRI2 started, I have got an error like below.
SAM was divided successfully.
First read of divided SAM files:
SAMPLE1_unmapped.sambc: @PG
SAMPLE1_unmapped.sambd: @PG
Fail to record first reads for 30 pieces of SAM.
Fatal error. Aborted.
Looking to the divided SAMs, they were split in the middle of a line like below.
@SQ SN:chrUn_
Would you please give any suggestion to solve this?
Thanks.
Hi thank you for developing this cool tool! I am using CIRIquant from fastq with following command.
CIRIquant -t 30 \ -1 $read_1 \ -2 $read_2 \ --config $BASE/CIRIquant.config \ -o $BASE/CIRI_quant_output \ -p $SAMPLEWhen CIRI2 started, I have got an error like below.SAM was divided successfully.
Looking to the divided SAMs, they were split in the middle of a line like below.
@SQ SN:chrUn_Would you please give any suggestion to solve this? Thanks.