Closed algaebrown closed 1 year ago
These are the number of candidate reads after each filtering step (as indicated in the supplementary Fig.3 in the CIRI-long manuscript).
The collapse step drop will drop singleton reads (BSJ with only 1 supporting reads in all samples), so the number should be smaller than the json file.
Hi Kevin, thanks for making this wonderful package.
I wonder what are the meanings of these numbers:
and when I look at the row numbers in .read output in the collapse step, the numbers don't quite match up with json: the .reads file has 13409 reads? does this corresponds to all the reads mapping to circular RNAs?
I think the repo would benefit from having a detail documentation of:
Thanks!!!