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bioinfo-biols / CIRI-long

Circular RNA Identification for Nanopore Sequencing
https://ciri-cookbook.readthedocs.io
MIT License
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Retain the bam file from ciri-long steps #20

Open algaebrown opened 1 year ago

algaebrown commented 1 year ago

Hi!

Thanks for building a pipeline. Is there a way to retain the intermediate bam files that is used to find the splicing signals and such? Thanks.

Charlene

Kevinzjy commented 1 year ago

Hi @algaebrown , the alignment step is performed with multiple alignment strategies in memory, and the output is complicated to be converted to a single bam file. So CIRI-long does not provide such option to generate an intermediate bam output.