search

bioinfo-biols / CIRIquant

circular RNA quantification tools
https://sourceforge.net/projects/ciri/files/CIRIquant
MIT License
28 stars 17 forks source link

CIRIquant for stranded paired-end reads(dUTP method) #57

Open junjunlab opened 1 year ago

junjunlab commented 1 year ago

Hi, Thanks for this great tool. Should I need do some settings for stranded paired-end reads when using CIRIquant?

Best wishes, Jun Zhang

Kevinzjy commented 1 year ago

Hi @junjunlab , CIRIquant has a "-l" option for specifying library types.

-l, --library-type Library type, 0: unstranded, 1: read1 match the sense strand, 2: read1 match the antisense strand (default: 0)

Please refer to https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_2_quantification.html for details.