Generation of dbNSFP database actually uniquify values (e.g. "D,T,.,T" as "D,T"). These values are formatted as list because of transcript granularity (see Ensembl column). Uniquify allows to provide a "variant" point of view, instead of a "transcript" point of view.
Add an option (default False) to uniquify or NOT uniquify values, in order to keep (or not) transcript information.
antonylebechec
commented
2 months ago
Generation of dbNSFP database actually uniquify values (e.g. "D,T,.,T" as "D,T"). These values are formatted as list because of transcript granularity (see Ensembl column). Uniquify allows to provide a "variant" point of view, instead of a "transcript" point of view. Add an option (default False) to uniquify or NOT uniquify values, in order to keep (or not) transcript information.