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bioinfo-chru-strasbourg / howard

Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
GNU Affero General Public License v3.0
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Error in prioritization step #272

Open JbaptisteLam opened 2 months ago

JbaptisteLam commented 2 months ago

Maximum line size of 2097152 bytes exceeded. Actual Size:4507623 bytes.

Possible Solution: Change the maximum length size, e.g., max_line_size=4507624

file=test.vcf delimiter = (Set By User) quote = " (Auto-Detected) escape = \0 (Auto-Detected) new_line = Single-Line File (Auto-Detected) header = false (Auto-Detected) skip_rows = 143 (Set By User) date_format = (Auto-Detected) timestamp_format = (Auto-Detected) null_padding=0 sample_size=20480 ignore_errors=false all_varchar=0

A workaround is to add "ignore_errors=True" in all query,

Best,

JB

antonylebechec commented 2 months ago

Can you provide the test.vcffile?